rs46548197 SNP Detail

Summary

• ID
  rs46548197
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:94207416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGGAACAGG GAAGGAGAGA GCAACAAGTA CCTCCTAAAT
  TTCCACACTT GCCTGCATGG CACGTCTACA GTCTTGGTTC ATGCTATGTA ATTCCCTACT
  Y
  CCCCCCCCCC CCCTTTTTTT TTTCTTCCTT TAGTTTCTGG AGATAGAGTC TCTCTGTGTT
  GCCTATGCTC GTCTTGAGCT GGTGGGTTTA GGAAAATCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146953764	ENSMUSSNP5631950	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320397535	CHEV_2_94217228	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46548197					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:94207416 () rs orientation: forward

Symbol	Name	Function Class
Rr373553	regulatory region 373553	320 bp upstream
Rr561371	regulatory region 561371	1799 bp proximal
Ttc17	tetratricopeptide repeat domain 17	Intron