rs46548275 SNP Detail

Summary

• ID
  rs46548275
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128533725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTGG GTGCTGGTTT CACAACCAGT
  A
  CCTGTCTGTG ACCTGTGGGA TGTTG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss145462726	ENSMUSSNP2192160	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss319965293	CHEV_1_130502565	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs46548275					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128533725 () rs orientation: forward

Symbol	Name	Function Class
Rr366987	regulatory region 366987	within coordinates
Rr396265	regulatory region 396265	25 bp upstream
Tssr13482	transcription start site region 13482	1986 bp downstream