rs46548813 SNP Detail

Summary

• ID
  rs46548813
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:94798984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTTCTAGT GCTGGGCGTG
  AGGAGTCTTT GGGTCTTAGA TGCACAGGAA CCTTCCATTC CCTCATGTCA CTTAAGTCCT
  AAACTTGAGG ATCAGTTTAT GCCTACTTGT TATAGCTTCT CTTTTAGCTT TGACGAAAAT
  TGAAAAGTGG GGTTTCTTCA CTGCCATCCA TTGGGCTGAA ATAGATCACA CGTGGCCAGC
  M
  CAGCCCAGAG AGGCCTTAGC CAGCAAGAGG GGCCTGAGGG TGGGGGTGAG GGGGGGGGCC
  TGCAGCCCAA GACTTTGCTC ACACAGATCT AAGAGCAAGT CTGTGCTGTG CTTTCTCTAT
  CCTATCCACC ACTCCAGGGA CGTAGTGCCA GCTGCTGCCC CCACCCCTAC TTTGGTTAAG
  CTTTCTGAGC TTTCTGAGTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60512643	NES16528921	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46548813					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60512643	NES16528921	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:94798984 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8509	CpG island 8509	139 bp distal
Gm31407	predicted gene, 31407	103 bp upstream
Kcnj6	potassium inwardly-rectifying channel, subfamily J, member 6	424 bp upstream
Rr520241	regulatory region 520241	481 bp distal
Rr520242	regulatory region 520242	80 bp distal
Tssr142245	transcription start site region 142245	688 bp upstream
Tssr142246	transcription start site region 142246	639 bp upstream
Tssr142247	transcription start site region 142247	533 bp upstream
Tssr142248	transcription start site region 142248	509 bp upstream
Tssr142249	transcription start site region 142249	421 bp upstream
Tssr142250	transcription start site region 142250	398 bp upstream
Tssr142251	transcription start site region 142251	372 bp upstream