rs46548974 SNP Detail

Summary

• ID
  rs46548974
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126222140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCTCACC AGCTCACCAA
  GCACCCCATC CTGGAAGCCA GCCTGGTATT TCATGACTGA ATTTGAGCCC TCGGTTGCTT
  AAAACAAATC CTCTGCATGT TTTAAATCAT GGATGCTGGG GTTTTTTTTT TTTTTTTCAT
  TTTGCAAATG GTATTAACAG AAACATTCTC TTCCAAAAGC AGCTCTATAT AATAGGACCT
  Y
  ATGGTGCTCA AGAATATGTA GGGGACTGGC CACAGGTTGT CTCTGGGACA GCACTGCAAA
  GAAACAAAGC AACTTCCCTG GAAGAAACCA TAGAAACAGG CTCCTCAAAG CATCTGCATA
  CATTAGAACA AGGCAACAAT CACGGAGAAC CGTTCAAGCC CATATGCTAC GCAATAAGGA
  CGCTCCCTTT CCAGATCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss145875149	ENSMUSSNP1810066	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs46548974					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126222140 () rs orientation: forward

Symbol	Name	Function Class
Gm39087	predicted gene, 39087	within coordinates
Nupr1	nuclear protein transcription regulator 1	278 bp downstream
Rr655536	regulatory region 655536	1258 bp distal
Rr655537	regulatory region 655537	707 bp distal
Rr655538	regulatory region 655538	560 bp distal
Tssr69045	transcription start site region 69045	63 bp downstream
Tssr69046	transcription start site region 69046	277 bp upstream
Tssr69047	transcription start site region 69047	479 bp upstream