rs46549857 SNP Detail

Summary

• ID
  rs46549857
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:75544937 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAGGTGGAG CAGGCTAGAA GTAGATGCCG GGACTGTGGC
  TGGCCTCAGG CCCGGAGGGC GGCGGCTACA CGCCCTCCTT CCGATGCGGG GCGGTGGCTG
  Y
  GGGGGCGCCA GCGGGCATCC TAGGAATGCG GCTGCGCCGC TCGGGATGGG TGAAGTCCGT
  CGGACCCCTC CACGCGCGGA TTCCCCTCAT TCCAGCCGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323751159	CHEV_11_75467613	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs46549857					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75544937 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3271	CpG island 3271	1848 bp distal
Cpgi3272	CpG island 3272	within coordinates
Cpgi3273	CpG island 3273	1362 bp proximal
Gm71962	predicted gene, 71962	308 bp upstream
Myo1c	myosin IC	within coordinates
Rr402734	regulatory region 402734	464 bp upstream
Rr451240	regulatory region 451240	1236 bp distal
Rr451241	regulatory region 451241	1953 bp distal
Rr451242	regulatory region 451242	1813 bp distal
Rr451243	regulatory region 451243	1650 bp distal
Rr451244	regulatory region 451244	319 bp distal
Rr451245	regulatory region 451245	674 bp distal
Rr451246	regulatory region 451246	within coordinates
Rr451247	regulatory region 451247	1272 bp proximal
Rr451248	regulatory region 451248	1773 bp proximal
Tssr103025	transcription start site region 103025	1869 bp downstream
Tssr103026	transcription start site region 103026	1640 bp upstream
Tssr103027	transcription start site region 103027	1734 bp upstream
Tssr103028	transcription start site region 103028	1800 bp upstream
Tssr103029	transcription start site region 103029	1817 bp upstream
Tssr103030	transcription start site region 103030	1868 bp upstream
Tssr103031	transcription start site region 103031	1892 bp upstream
Tssr103032	transcription start site region 103032	1992 bp upstream