rs46550614 SNP Detail

Summary

• ID
  rs46550614
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46250521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGAACTAA CCAAGAATAA
  CAAAAGTTAC CAATATGGAG CACTATGATT TAGTGGTGGT AGGTAGCTAT GGGGTCAGTG
  AGAGAATCCA GAGCAGGGAT CACAACTGGA TCATTCTCTG GCCTTGCCTC TGGCACTGGG
  CAGGAGTGGC CTTGGGGAAA CCAAGCATCT TTGTCCGACT GCAGTTTCTG CATCCAGAAC
  R
  TGACAGGACA TCTCATTTCT TCTCTTGATG CTAAGTTAAT TTTGAGTTTT CTGTGTGCCA
  GGCACTGTGC CAGGAAGAGT CGGGCACATT ACAATATAAG CGCTCCTGTG GAAGACTGAG
  GCCCTGGTTG GGTAGGACTG AGGAGAGAGG TTTATAGCAG TGAGCAGAGA GGGGGCCAGG
  TTTGACTGGG ATTTGAAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61392153	NES16761216	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46550614					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61392153	NES16761216	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46250521 () rs orientation: forward

Symbol	Name	Function Class
Rr383308	regulatory region 383308	56 bp downstream
Rr678124	regulatory region 678124	1282 bp distal
Rr678125	regulatory region 678125	577 bp distal