rs46552575 SNP Detail

Summary

• ID
  rs46552575
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134644008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATAG GAGGTTATTT GGAATATAGT
  Y
  CTGGAGGGAG GAATCCATCA TGGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147538673	ENSMUSSNP6261440	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss321349951	CHEV_4_134472612	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs46552575					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134644008 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15052	CpG island 15052	1485 bp distal
Rr100259	regulatory region 100259	1207 bp distal
Rr367743	regulatory region 367743	1785 bp upstream
Tmem50a	transmembrane protein 50A	1701 bp upstream
Tssr39578	transcription start site region 39578	1578 bp downstream
Tssr43943	transcription start site region 43943	1724 bp upstream
Tssr43944	transcription start site region 43944	1688 bp upstream
Tssr43945	transcription start site region 43945	1678 bp upstream
Tssr43946	transcription start site region 43946	1669 bp downstream