rs46554629 SNP Detail

Summary

• ID
  rs46554629
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19240446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATCAGCC AGTATAGTAG
  TAATGTGTGA GTGTTGGATT TCTAGTTTGT AAATGTATCA CAGTAATGTA AGATTAGGGA
  ACACTGGGTG AGGTAACATC AGAACTTTTC CTACCCCTTG GCACTTTTCT GTAAAACAAA
  TATTTTTTTT CTTTCAAAAA GCAAATCTTG CTGGGCAGTG ATGGCGCACA CCTTTAATTC
  Y
  AGCACTCCGG AGGCAGAGGC AGGTGGATTT CTGAGTTCGA GGCCAGCCTG GTCTACAGAG
  TGAGTTCCTG GACAGCCAGG GCTATACAGA AAAACCCTGT CTCGAAAACA AAACAAAACA
  AAACAAAAGC AAAGCAAAAC AAAAGCAAAG CAAAGCTTAA AAGTTCAAAA GCATAAGGAC
  TGCAGGTCTT TCTTCGATTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134665693	ENSMUSSNP3826370	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46554629					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19240446 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13001	CpG island 13001	1473 bp proximal
Mtfr1	mitochondrial fission regulator 1	1045 bp upstream
Rr397614	regulatory region 397614	1704 bp upstream
Rr573951	regulatory region 573951	557 bp proximal
Rr573952	regulatory region 573952	1338 bp proximal
Rr573953	regulatory region 573953	1839 bp proximal
Tssr28500	transcription start site region 28500	1020 bp upstream
Tssr28501	transcription start site region 28501	1039 bp upstream
Tssr28502	transcription start site region 28502	1077 bp upstream
Tssr28503	transcription start site region 28503	1084 bp upstream
Tssr28504	transcription start site region 28504	1803 bp upstream
Tssr28505	transcription start site region 28505	1817 bp upstream
Tssr28506	transcription start site region 28506	1830 bp upstream
Tssr28507	transcription start site region 28507	1932 bp upstream
Tssr28508	transcription start site region 28508	1944 bp upstream