rs46554973 SNP Detail

Summary

• ID
  rs46554973
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:126418322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGGATGG TGCCACTATG
  ATACTCACCA TCAGAGCGGT ACACAGCTTT ACAGGGAACT TTCAAGTCGT TTGGAACCCC
  TCTCTGCTTC CTGCCCACCC AAAGGGCCCA CACCGATGCC AAGGTTTGGG AATCCCCTCC
  AGGAAGTTTT GTTTAATACA AGTACATGAA TGATTCAAAA ATAGCACACG GGTTTCCAAA
  R
  CAATGCTCAT GCAGGAGAAA TAAAATAAAA TAAAATAAAA TAAAATAAAT AAAAGCTGAG
  TCTGATGGTT TAGATAATGA ATATTCTGCC AAACATAGTG GGGAGTTAGA AAGAAGTGAA
  GAACAAAACA TTCTTGTAAA GATAGTTTCG GTGGCAAGAA TGAAACCCTC CTTTGCACAC
  ACTTTGGGGA GGAGGAGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60794541	NES16466661	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46554973					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60794541	NES16466661	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:126418322 () rs orientation: forward

Symbol	Name	Function Class
Cpgi687	CpG island 687	1943 bp proximal
Nckap5	NCK-associated protein 5	within coordinates
Rr417489	regulatory region 417489	1440 bp proximal
Rr417490	regulatory region 417490	1811 bp proximal