rs46555258 SNP Detail

Summary

• ID
  rs46555258
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:121426479 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTCACAG TCCGTTGAGT
  CCTGTTTATA CTCCCTCCAA ACATCACGTG ACCTCCAAGT GTCTCACCCT GTGTCAGCTG
  ACATCACTCT GCCAATCAGT CGGAGTCCAA GAAAGCGGCA AGAAGCTGCC ACCAGAAGTT
  TATGGTGTGT TTCTTTCTAT GGAGTTCTGA CAAATGGAGC TCAATGGCAC AATGAAAGGC
  R
  GACCAATACA TGCGTGTTGT TAGCAAAGAA TTCTTCACCA TGTGTCCTTT CACATGCTTG
  CTTTAGAAAT ATCCTTTCAC CTGTGTCTGC TTCAGGAAAA CACTCCTTCA TGTGTTTGCC
  CAGCAAAACA CCATCCATCA CAACTGACTT TCCAAAGGAT GCTGCTTCAA GGATGTTTGA
  GCACAGCTCT TCAAGCGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss61239942	NES16854030	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	A	A	G	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs46555258					SNP	G	G	G	A	G	A	A	G	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61239942	NES16854030	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:121426479 () rs orientation: forward

Symbol	Name	Function Class
Gm57058	predicted gene, 57058	within coordinates
Lyzl4	lysozyme-like 4	within coordinates
Lyzl4os	lysozyme-like 4, opposite strand	within coordinates
Tssr92055	transcription start site region 92055	198 bp upstream