rs46555355 SNP Detail

Summary

• ID
  rs46555355
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:76474374 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCCCCGCT GAAAAGAAAA
  AAAAATGAAA ATGAAAATTT CATCAACATA TCATTTCATA CACGTGAGCT TGGTAACATT
  GTAAAAAGTC TGATAAAGGC AGCTCCGGTG GGGTGGGGTT TACAGGTGTA CAGGTGGGTT
  TACAGGTGTA CAGGTGGGAG TGGAAGCCTC AGAAGTCGCT TCAGTGGCAG CCAGAAGACT
  Y
  GAGGACGTTC TTCTCACTCC TGGCGTCTCG CTCTGGGGCT ATGTTGTAGA GGAGAATGAG
  AAACCTGGCA GGAAAAGAAT CTTCTCGTGA GGTTGGCTGC AAAAACAAAA TACAAGAAAA
  AAGAAAGAAA CAAACAAACA ATAAAAACAA CAACAAACCC CTGATGTCAC TTTAGCTGCC
  TGTCCACACA GCAGCTAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63183995	NES17459530	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46555355					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63183995	NES17459530	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:76474374 () rs orientation: forward

Symbol	Name	Function Class
Gm58741	predicted gene, 58741	1773 bp upstream
Rr347326	regulatory region 347326	374 bp distal
Rr355557	regulatory region 355557	1375 bp distal
Tssr151998	transcription start site region 151998	1752 bp upstream