rs46558645 SNP Detail

Summary

• ID
  rs46558645
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164174587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAC TCCTACTGAG CAGGGAGAGG
  M
  AAGCTGGCAT TTGCTGATAA GAAAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148223049	ENSMUSSNP4671636	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46558645					SNP	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164174587 () rs orientation: forward

Symbol	Name	Function Class
Svs5	seminal vesicle secretory protein 5	98 bp upstream
Tssr744	transcription start site region 744	662 bp upstream
Tssr745	transcription start site region 745	705 bp upstream
Tssr746	transcription start site region 746	716 bp upstream
Tssr747	transcription start site region 747	729 bp downstream
Tssr748	transcription start site region 748	750 bp upstream
Tssr749	transcription start site region 749	782 bp upstream
Tssr750	transcription start site region 750	795 bp upstream
Tssr751	transcription start site region 751	849 bp upstream
Tssr752	transcription start site region 752	918 bp upstream
Tssr753	transcription start site region 753	925 bp upstream
Tssr754	transcription start site region 754	1597 bp upstream
Tssr21562	transcription start site region 21562	56 bp upstream
Tssr21563	transcription start site region 21563	73 bp upstream
Tssr21564	transcription start site region 21564	92 bp upstream
Tssr21565	transcription start site region 21565	117 bp upstream
Tssr21566	transcription start site region 21566	127 bp upstream
Tssr21567	transcription start site region 21567	141 bp upstream
Tssr21568	transcription start site region 21568	151 bp upstream
Tssr21569	transcription start site region 21569	628 bp upstream
Tssr21570	transcription start site region 21570	690 bp upstream
Tssr21571	transcription start site region 21571	721 bp upstream
Tssr21572	transcription start site region 21572	738 bp upstream
Tssr21573	transcription start site region 21573	767 bp upstream
Tssr21574	transcription start site region 21574	831 bp upstream
Tssr21575	transcription start site region 21575	1609 bp upstream
Tssr21576	transcription start site region 21576	1625 bp upstream
Tssr21577	transcription start site region 21577	1644 bp upstream
Tssr27433	transcription start site region 27433	686 bp downstream
Tssr27434	transcription start site region 27434	709 bp downstream
Tssr27435	transcription start site region 27435	737 bp downstream
Tssr27436	transcription start site region 27436	756 bp downstream
Tssr27437	transcription start site region 27437	777 bp downstream
Tssr27438	transcription start site region 27438	807 bp downstream
Tssr27439	transcription start site region 27439	821 bp downstream
Tssr27440	transcription start site region 27440	831 bp downstream
Tssr27441	transcription start site region 27441	886 bp downstream
Tssr27442	transcription start site region 27442	894 bp downstream
Tssr27443	transcription start site region 27443	957 bp downstream
Tssr27444	transcription start site region 27444	966 bp downstream
Tssr27445	transcription start site region 27445	1582 bp downstream
Tssr27446	transcription start site region 27446	1626 bp downstream
Tssr27447	transcription start site region 27447	1721 bp downstream