rs46559067 SNP Detail

Summary

• ID
  rs46559067
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:173567495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAATTGATTT TATAATATGC CATATATAGG TCTATGAGCT
  AGAAAAATTA ATAAATCATT TAAAATACAA ATCTAAAAGT ATACAGCATT TAGGAGGCAG
  R
  GATTGCTAGA AATCTGTAAA TTTGGAGCCA TCCTGGTCAA CATAGTCAGT TCTAAGCCAA
  TCAGTGCTAC ATAGTGAGAC CTGTCTAAAA AACAAAAAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146240378	ENSMUSSNP4951272	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss320134048	CHEV_1_175670060	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46559067					SNP	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:173567495 () rs orientation: forward

Symbol	Name	Function Class
Ifi207	interferon activated gene 207	within coordinates
Rr29033	regulatory region 29033	1306 bp proximal
Tssr15300	transcription start site region 15300	1976 bp upstream
Tssr15301	transcription start site region 15301	1807 bp upstream
Tssr15302	transcription start site region 15302	1729 bp upstream
Tssr15303	transcription start site region 15303	1010 bp upstream
Tssr15304	transcription start site region 15304	1078 bp downstream
Tssr15305	transcription start site region 15305	1761 bp downstream
Tssr15306	transcription start site region 15306	1788 bp downstream
Tssr15307	transcription start site region 15307	1829 bp downstream
Tssr15308	transcription start site region 15308	1866 bp downstream