rs46559678 SNP Detail

Summary

• ID
  rs46559678
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:40504806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGTCTTAA GACCTGAGCC
  TCCAACCTGT GGTACCAGAT ACCATCTTCA GGTAGAAGGT GCCAGAATTG AAAGAGAATC
  CTGCTGAACC GGATGTGTCT GCTGGAGAGT CTGCTATATT GGTTGCTGGA TGTGTGTGGA
  GAAAGAACCC ATTCCCCTAG ACACAGAACT GTTCCATTTT CTGTGACTTT GGGATTGTGG
  R
  CTGAAGGGAC AATGCCCTTT CTTTTCCATT TTGACACCCA GACAGCCTTG TATAAAATCG
  TACCTAGCTG AGCTCACCAG AGGCTCATGG CCACATGCAA AAGGAATCAT CTTTCTCTCC
  TTTTCAGATG GGAAGACAGA CTGAGACAGC CTCTGACTTG CTCAAGATAA GATAGTGAGG
  ACCCTGCTTT GACAAAGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147067330	ENSMUSSNP6244048	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46559678					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:40504806 () rs orientation: forward

Symbol	Name	Function Class
Ddo	D-aspartate oxidase	1201 bp upstream
Rr214674	regulatory region 214674	195 bp proximal
Rr224698	regulatory region 224698	794 bp proximal
Tssr93026	transcription start site region 93026	1177 bp upstream
Tssr93027	transcription start site region 93027	1247 bp upstream