rs46559761 SNP Detail

Summary

• ID
  rs46559761
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31350467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCACC CGTTGTCCAT CTGTGCTAGG
  Y
  GTGGTCCTCC CTCCCTCCTT GTGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60562209	NES16490596	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	C	C	C	T	C	C		C	C	T	C		C
ss145456868	ENSMUSSNP5905801	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						T
ss325358787	CHEV_17_31268438	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46559761					SNP	T	T	C	C	T	C	C	C	T	C	C	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60562209	NES16490596	PERLEGEN	MM_PANEL	f	SNP	C/T
ss159840448	UOL_MMUSEQ_9009	UOL_CGR	Mmu17_30637692_36837814	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31350467 () rs orientation: forward

Symbol	Name	Function Class
Rr334776	regulatory region 334776	667 bp distal
Rr341222	regulatory region 341222	1468 bp distal
Rr341223	regulatory region 341223	1735 bp proximal
Tff3	trefoil factor 3, intestinal	1882 bp upstream
Tssr147270	transcription start site region 147270	1874 bp upstream