rs46560697 SNP Detail

Summary

• ID
  rs46560697
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134214017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTCAAAAA AATTTTAATT
  TATTTTAAAA CGTTTAAAAT GTTTAGTAAC TTTAAAATTT AAAGTAAATT TTTACAAATT
  AAAATTCACT ATAGTAATGT ATTTAACCTA TTGCACCCAA AACATTATTC TAGAATGTAC
  TTATTTCAGC ACAGAGAACC AGAATGAGCC GGCAACGGTG GCCTTCAAAT GGATCTGAGA
  S
  TTCAAGGACT GCCTATATAT AGCAAGTTCC AGGCCTGCTG GGGCTACACA GTGGGACCTT
  GTCACTAAAT AAATTATAGC CGCTTTATTG AGATACAGGA AAACTCATCC TTTAAAATAC
  AATGCAAGTC AGAAAAAGAA TTCCTTCCAA AGTAAAATAA AAACAAAATA ACAGAACTCA
  AGCCTAGTGT GGTAACTCAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60846682	NES16012796	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46560697					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60846682	NES16012796	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134214017 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16715	CpG island 16715	399 bp distal
Gm73509	predicted gene, 73509	within coordinates
Gtf2ird2	GTF2I repeat domain containing 2	within coordinates
Rr110116	regulatory region 110116	584 bp proximal
Rr110117	regulatory region 110117	1984 bp proximal
Rr124476	regulatory region 124476	216 bp distal
Rr399398	regulatory region 399398	503 bp downstream
Tssr49084	transcription start site region 49084	1132 bp downstream
Tssr53607	transcription start site region 53607	754 bp upstream
Tssr53608	transcription start site region 53608	739 bp upstream