rs46561663 SNP Detail

Summary

• ID
  rs46561663
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127584209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGGTTGA AAAAATATAT
  AGCCAGCGCG ATCTTAAGCT TATGAAATAC GTGATCTTTA TAAAATAAGG GAGGAACCGA
  ACAATACTGG GGGAGGGGAG CGGTGTGTGT GTATGTCTTT CCTCTCCTAT TCTTGCAAAC
  TTTTCATCCA ATCGGAAACT AGAAGGATGC CGCTTGTGCA TTCTGGCTCA CTAGCCGACA
  Y
  CCCGGTCCCC CGCCGTCACA TGCTGTTATT GAACTTGGGA AATATCCCAG TCCGGAGTGC
  ACAAGCCTCT TCCAGACCCA CCTCCCGGCC GTAGCCGGGT CACAGGAAAG CCCAGCGTCG
  TTGTGATCCG GGATTTTCCA ATTTTCCCAG AGGATTCGCA TCCGGTTGCT GGGAGAGGCT
  CCGTGGGGGG TCCGCGGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135871356	ENSMUSSNP1591408	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss320956922	CHEV_3_127493478	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46561663					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127584209 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13800	CpG island 13800	432 bp distal
Cpgi13801	CpG island 13801	78 bp proximal
Gm56817	predicted gene, 56817	303 bp upstream
Gm65225	predicted gene, 65225	within coordinates
Rr584860	regulatory region 584860	638 bp distal
Rr584861	regulatory region 584861	741 bp distal
Rr584862	regulatory region 584862	314 bp distal
Rr584863	regulatory region 584863	within coordinates
Rr584864	regulatory region 584864	255 bp proximal
Tifa	TRAF-interacting protein with forkhead-associated domain	within coordinates
Tssr31594	transcription start site region 31594	1358 bp downstream
Tssr31595	transcription start site region 31595	1346 bp downstream
Tssr31596	transcription start site region 31596	1313 bp downstream
Tssr31597	transcription start site region 31597	1273 bp downstream
Tssr31598	transcription start site region 31598	1250 bp downstream
Tssr31599	transcription start site region 31599	751 bp downstream
Tssr31600	transcription start site region 31600	683 bp downstream
Tssr31601	transcription start site region 31601	631 bp downstream
Tssr31602	transcription start site region 31602	577 bp downstream
Tssr31603	transcription start site region 31603	559 bp downstream
Tssr31604	transcription start site region 31604	435 bp downstream
Tssr31605	transcription start site region 31605	42 bp upstream
Tssr31606	transcription start site region 31606	240 bp upstream
Tssr31607	transcription start site region 31607	478 bp upstream
Tssr31608	transcription start site region 31608	546 bp upstream
Tssr31609	transcription start site region 31609	597 bp upstream
Tssr31610	transcription start site region 31610	706 bp upstream
Tssr31611	transcription start site region 31611	814 bp upstream
Tssr35598	transcription start site region 35598	802 bp upstream
Tssr35599	transcription start site region 35599	720 bp upstream
Tssr35600	transcription start site region 35600	692 bp upstream
Tssr35601	transcription start site region 35601	659 bp upstream
Tssr35602	transcription start site region 35602	342 bp upstream