rs46562507 SNP Detail

Summary

• ID
  rs46562507
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80634881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCGCCCTCT TGCCTCAGGA
  TCGGCGCGCG CCCGCCGGGA GAGCGCGCTC TCGCGAGGCC CGTTGGGTCG CCGCGTGATT
  GCTGGCTTGG GTGGCGCTTC TGTGGCCTCC AGGGTGGTTC GGGGTGTCCG AGTGGCGTCT
  CGGCGTGTAT TTTGACCTCC TTGGTTGTTT CCGTTTCCAC CTTCGTTAAT CGGGGCCCTG
  R
  CGACCACTGC TCCTGTCCAC CGGAGCAGGT CCCTTGCTGG GATTGAAAGA TAACGGTATC
  TGCACATAAA AGGGATTTGT CCTGGGACCA GGCCTCCTCC CAGACCATTA CCTTAACATA
  TACCACGTCT CTGTCCTTAT TGATCGTTCA TCGGTAATCT TACGGTAGTC CGTGAGGTTG
  CGCATCTCCC GTCCCTGCGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ
ss61290501	NES16901610	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ
rs46562507					SNP	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61290501	NES16901610	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80634881 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1908	CpG island 1908	within coordinates
Plekhj1	pleckstrin homology domain containing, family J member 1	477 bp upstream
Rr435393	regulatory region 435393	839 bp distal
Rr435394	regulatory region 435394	432 bp distal
Rr435395	regulatory region 435395	305 bp distal
Rr435396	regulatory region 435396	within coordinates
Sf3a2	splicing factor 3a, subunit 2	within coordinates
Tssr94606	transcription start site region 94606	1080 bp downstream
Tssr94607	transcription start site region 94607	937 bp downstream
Tssr94608	transcription start site region 94608	431 bp downstream
Tssr94609	transcription start site region 94609	405 bp downstream
Tssr94610	transcription start site region 94610	290 bp downstream
Tssr94611	transcription start site region 94611	95 bp downstream
Tssr98507	transcription start site region 98507	1156 bp upstream
Tssr98508	transcription start site region 98508	1097 bp upstream
Tssr98509	transcription start site region 98509	1057 bp upstream
Tssr98510	transcription start site region 98510	1044 bp upstream
Tssr98511	transcription start site region 98511	831 bp upstream
Tssr98512	transcription start site region 98512	748 bp upstream
Tssr98513	transcription start site region 98513	471 bp upstream
Tssr98514	transcription start site region 98514	149 bp upstream