rs46562784 SNP Detail

Summary

• ID
  rs46562784
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:30330285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTAACTG GCTAAGAGTT
  GGAGCAGTCC TATGTGGTCC CCTCTTCTAT CTCGGCTCCT TCACTTCTCA TTAAGGCTGA
  CCAGTGCTTC CAATGGTCAC TGCGTCTTTT TAGAAAGGCA TTTTGGCTGC AGAAGACCAC
  AGGACTGTAT TGGCTCTGGC ATTCTACTGC CAACAAGAAC ACTACCACAG ATGCACCTGG
  Y
  CCCAGGCATG TGCCGCCAAG AATATCACCA CAGATGCACG TGGCCCCAGG CATGTGCAGT
  CCTAGTTTCT GCAGGTGAGT GGGCAGACTG CCAGCTTCCT TCTCTTACCT CTTTTCTGCT
  AAATAACATG ATGTTCGGTC CATATCTGGC TAGACCTGTA ATATCCTCAA CACGCTCCCC
  CAAATAGGAA CAACAGGTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52709020	NES15548874	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46562784					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52709020	NES15548874	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:30330285 () rs orientation: forward

Symbol	Name	Function Class
Gm62449	predicted gene, 62449	within coordinates
Prkcd	protein kinase C, delta	within coordinates
Rr404042	regulatory region 404042	278 bp downstream
Tssr4363	transcription start site region 4363	554 bp upstream
Tssr124839	transcription start site region 124839	405 bp downstream
Tssr127872	transcription start site region 127872	1615 bp upstream
Tssr127873	transcription start site region 127873	524 bp upstream
Tssr127874	transcription start site region 127874	507 bp upstream
Tssr127875	transcription start site region 127875	504 bp upstream
Tssr127876	transcription start site region 127876	817 bp downstream