rs46564111 SNP Detail

Summary

• ID
  rs46564111
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29264820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGACTTGAA CTCAGGACCT TCAGAAGAGC AGTTGGCACC
  CTTAACCGCT GAGCCACCTC TCCAGCCTGT GAAAGGTTTT TTTATGTTTA TATGCCTGAG
  K
  ATATGTCTGT ACCAAGTGTG TGCCACCTGT AGCTGTCAGA ACAGGGTGTC AGATCCCTTG
  AAACTAGTTG TTCTTAAGAC AGTAAACCCA GGTGCTCAGT                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60559301	NES16575702	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46564111					SNP	T	T	T	T	T	T	G	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60559301	NES16575702	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29264820 () rs orientation: forward

Symbol	Name	Function Class
Rr524768	regulatory region 524768	1840 bp distal
Rr524769	regulatory region 524769	within coordinates
Rr524770	regulatory region 524770	755 bp distal
Rr524771	regulatory region 524771	1013 bp proximal
Rr524772	regulatory region 524772	1232 bp proximal
Rr524773	regulatory region 524773	1876 bp proximal
Tssr143492	transcription start site region 143492	1369 bp upstream