rs46564164 SNP Detail

Summary

• ID
  rs46564164
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50912264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATTTAAT ACTAAGTAAA
  TTAGGATGCA ATAGGGTGTT GTCTTTCAAA AAGTGTTACT CTGAAGACTC ATTCTGAGAT
  ATTCTGAGAT AATCTTTAAA AAAAAAAGGT TCAGAACTGG AAAGTTTGAG AATGCTACAT
  TAAAGAAGCT TGGGAAGCCC GGCGTGAGGG CTCCTCTTCT TAAGTCCTTA CCATTGTAGC
  S
  GATTAAAGGC TCCTGGGTAC CAAAGAAATC TGACTGACTC TGTTCAATAA AGCATTTTCC
  AAGCTAATTT GATGCAAAGG TATCTCTTCT ATTCATGTAC TAACACTCCT CAGTGTTCAT
  TAGCAGCAAG CAGCCTTTGG AAAGCCTCTG GTTTAACCTA GAAGATGAAC CGTCAGCACC
  TCTGGGAATC CCTCCACCTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133185749	ENSMUSSNP3589452	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46564164					SNP	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50912264 () rs orientation: forward

Symbol	Name	Function Class
Gm31686	predicted gene, 31686	within coordinates
Gm67430	predicted gene, 67430	within coordinates
Rr543	regulatory region 543	within coordinates
Rr399654	regulatory region 399654	1849 bp upstream