rs46564895 SNP Detail

Summary

• ID
  rs46564895
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170472899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAG GCTAGTCTTG AACTTCTGGT
  Y
  CCTCTTACCT GCACTAAGAG TGGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146140304	ENSMUSSNP2054277	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss320111995	CHEV_1_172575461	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46564895					SNP	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170472899 () rs orientation: forward

Symbol	Name	Function Class
Cpgi995	CpG island 995	445 bp distal
Olfml2b	olfactomedin-like 2B	within coordinates
Rr28935	regulatory region 28935	within coordinates
Tssr280	transcription start site region 280	979 bp upstream
Tssr9928	transcription start site region 9928	872 bp downstream
Tssr9929	transcription start site region 9929	816 bp downstream
Tssr9930	transcription start site region 9930	760 bp downstream
Tssr9931	transcription start site region 9931	744 bp downstream
Tssr9932	transcription start site region 9932	728 bp downstream
Tssr9933	transcription start site region 9933	493 bp downstream
Tssr14922	transcription start site region 14922	990 bp upstream
Tssr14923	transcription start site region 14923	938 bp upstream