rs46566606 SNP Detail

Summary

• ID
  rs46566606
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126772680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCTTCATTT TGTCCAAACT CTGACCCTGT GGGAAGCTGA
  GTTTAAAGGA CTGAAAGAGG CAATGTCCGG GTAGCACATT GTTCAGATTA TCTCACACAG
  R
  TATTAATAGA TATTTGTAGT TAAGATTTAT GCTAAGAATC AAAAGCAAAG CCACTACAAA
  AATATTTGGA AATCTTATAG TTTGTTCAGA AAAGGGACA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147514238	ENSMUSSNP1859407	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
ss320498557	CHEV_2_126756496	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46566606					SNP	G	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126772680 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm75308	predicted gene, 75308			1933 bp upstream
Rr564422	regulatory region 564422			1569 bp proximal
Sppl2a	signal peptide peptidase like 2A			Intron
				Noncoding-Transcript-Variant
Tssr19974	transcription start site region 19974			1730 bp downstream
Tssr26084	transcription start site region 26084			1141 bp downstream