rs46569319 SNP Detail

Summary

• ID
  rs46569319
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:7281390 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCGG GGATTGACCG ATGGAAAACG
  S
  GACCGCCTCG CGGGGTCGGA TCCAC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss60965522	NES16157303	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs46569319					SNP	C	C	C	C	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60965522	NES16157303	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:7281390 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18306	CpG island 18306	within coordinates
Gm45844	predicted gene 45844	102 bp upstream
Rr642334	regulatory region 642334	205 bp distal
Rr642335	regulatory region 642335	within coordinates
Rr642336	regulatory region 642336	130 bp distal
Rr642337	regulatory region 642337	110 bp proximal
Tssr64464	transcription start site region 64464	391 bp downstream
Tssr70610	transcription start site region 70610	346 bp upstream
Tssr70611	transcription start site region 70611	305 bp upstream