rs46570894 SNP Detail

Summary

• ID
  rs46570894
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:61911524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCAACTAG GTTCATGATG
  GATCTGGTGA GACATTAAGG CTGGTTTAAG ACATTGTGGG CTATTGTGCT GGGACCCCCA
  CCCCACTCTG TTAGGGAGTG ACTGTATGGG ACTGCCTTGT TGTTTTGCCT GGTTAAGGGT
  GGCTGTTTCT TGCTGCTTTA CCTATTGAGT GCAGGATTTT GCATAAACCA GCTTCCCTTG
  R
  AAAGTAGAAG AAATTGATTT TTTTTTTTTG ATTGATTCTC CTCTGACTCA TCCTGTTTTG
  CTTCTGTGAC AGCAGTTTAC AGAACTGGAA AGGTGTCTCT TTTCTGTTGT TTCTGGTAAT
  TTGTATTATT TGCTCCTTGA AAGTCTGTCT GCTGAGTTCT TACCATCTCC ACGGATCCGA
  TTCTTGTCTT CTTTGACCGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52563386	NES15634458	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46570894					SNP	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52563386	NES15634458	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:61911524 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7133	CpG island 7133	1390 bp distal
Gm54427	predicted gene, 54427	1474 bp downstream
Pvt1	Pvt1 oncogene	within coordinates
Rr390819	regulatory region 390819	within coordinates
Rr503088	regulatory region 503088	1545 bp distal
Rr503089	regulatory region 503089	278 bp distal
Rr503090	regulatory region 503090	17 bp distal
Tssr131427	transcription start site region 131427	1617 bp downstream
Tssr131428	transcription start site region 131428	413 bp downstream
Tssr131429	transcription start site region 131429	383 bp downstream
Tssr134486	transcription start site region 134486	521 bp upstream
Tssr134487	transcription start site region 134487	503 bp upstream