rs46571104 SNP Detail

Summary

• ID
  rs46571104
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185415432 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACACA CACACACACA
  CACACGCACA CGCACACGCA CATGCACACT CGCGCACACA CACACACACA CACACACACA
  CGCACGCACG CACACACGCT CTCACACACA CAGAGCACAC ACAGAAAGGA TGCTCTCTTG
  TAGAGTAACC AGAGTTCTGG CTGAATCAGT GGAGGATTTA GAACAAAACT CGTAGTTGGC
  Y
  TAGGACCAGC CAGAGTCAAG CTCCCGGGCC TCCCAGGTGG TGTGGCCAGT CACTCCTGAG
  AGGGTAGAAG AAGACAGGGA TGCCCTGGTG TTGGGATTCA GAGATGTGCA CTGAGGAGCT
  CTGCTTTCCC ATTTATTGTT TAATCTCCCA GGCATGTGTT TCTTCATTTG TAGGGTGGCA
  ATTCTTATAT TTGAGTTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146440020	ENSMUSSNP2429659	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320178613	CHEV_1_187507114	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs46571104					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185415432 () rs orientation: forward

Symbol	Name	Function Class
Rr425420	regulatory region 425420	675 bp distal
Rr425421	regulatory region 425421	1127 bp distal
Rr425422	regulatory region 425422	1563 bp proximal
Rr425423	regulatory region 425423	1751 bp proximal