rs46571894 SNP Detail

Summary

• ID
  rs46571894
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72688571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAACTTGA AAGAACATCC
  GAGTGGATCT GGATATTTGT TTCTGTTTGT CAGGTTTCTG GGGGAGTCTG CCTTTTCTCC
  AGCCACTTCT CCCCAAGGGT GTAGCTTTTC TAGATGCTAA GGTGTGTGTG TGTTTGTGAA
  CTCGAAAAGA ATATATATGT AAGGAATCTA TATCTATTTC TCTAATTCCA GATAATAATT
  Y
  GGGAGCTTAC CCTGTGTTCC TTTATGAGCT GAGGAAAGAG CTGGAGAGTC CCATCAGATT
  TCGCCATTTT TAATATCTAC AAAAGCAAAC CTTTTCAACA ATGTTCTTGT CTGTCTCTTT
  GGCCTCCAAA AGAAAGGCTC ATGCTAAAGA GAAACCAAAT TGTGCTTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61421311	NES16805472	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46571894					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61421311	NES16805472	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72688571 () rs orientation: forward

Symbol	Name	Function Class
Gm68819	predicted gene, 68819	within coordinates
Rr197252	regulatory region 197252	1171 bp distal