rs46572089 SNP Detail

Summary

• ID
  rs46572089
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96437269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAG GGAAGAAAAC GTTGCATATC
  R
  CATCTAACCA AACCAGGAAT CAGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132681583	ENSMUSSNP6965087	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss323821048	CHEV_11_96407757	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46572089					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96437269 () rs orientation: forward

Symbol	Name	Function Class
Rr238060	regulatory region 238060	within coordinates
Rr238061	regulatory region 238061	1932 bp proximal
Rr252639	regulatory region 252639	within coordinates
Skap1	src family associated phosphoprotein 1	within coordinates
Tssr104543	transcription start site region 104543	1720 bp downstream
Tssr104544	transcription start site region 104544	1048 bp downstream
Tssr104545	transcription start site region 104545	1010 bp downstream
Tssr104546	transcription start site region 104546	994 bp downstream
Tssr104547	transcription start site region 104547	962 bp downstream
Tssr104548	transcription start site region 104548	862 bp downstream
Tssr104549	transcription start site region 104549	845 bp downstream
Tssr104550	transcription start site region 104550	794 bp downstream
Tssr104551	transcription start site region 104551	754 bp downstream
Tssr104552	transcription start site region 104552	746 bp downstream
Tssr104553	transcription start site region 104553	584 bp upstream