rs46572597 SNP Detail

Summary

• ID
  rs46572597
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:3844318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGAAAGAA AGTGTGTGTC
  CATGAATCAT GGCAGAGTTG GTAGCATATG ACGAAGGCTG TCTACAAGCC GAGCACAGTC
  CCAGGCACTA GGTGCCTTTG TTTAACTCTA GCAGCCCTAA GAGGCAAGGC CAACTCCCAA
  TAGCAAAGTT ATCAAGATCA CTACAGCCAG CGAAGGCCAA GTCCTCAGGA AAGTGCATAT
  Y
  CGCCTAAAGC AAAGGCCTGC CCTTGAGTCT AGGCCACCCT GAGACAACTC TGGTGAGAAC
  TCTGGAGTGG GGAAAAGGAC CTTGCTAGGC ACCCAGTCCT GTTTATTACT CTGTCAAGCT
  TCTGTGTGGG CCTGGGAAAT TTAGTTAAAT TCTCTAACCT TTCGTGCTCA CATTCTTGGA
  TTTCCACGTC CAAGTTTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61337739	NES16944837	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46572597					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61337739	NES16944837	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:3844318 () rs orientation: forward

Symbol	Name	Function Class
Gm60243	predicted gene, 60243	within coordinates
Rr462177	regulatory region 462177	1377 bp distal
Rr462179	regulatory region 462179	1635 bp distal
Rr462180	regulatory region 462180	1292 bp proximal