rs46573015 SNP Detail

Summary

• ID
  rs46573015
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:13010829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTCCCAG AACAGGATCT
  GGTTCTACAC TGACTGGAGA TATCTTCCTT TCTTATGGCT TTCTTCACAG TTCAGTCTTC
  CAGGCTGCTT TTTGTAGATG TGCAAGACCT GGCCCACCAA CTTCGCTAGC TGGCTCTGGT
  ATTTGGGGGA CAATCAATTC TCCCCTGTCT TTTGGCTTGT TTCAGTATGC CTCTCACTCT
  S
  TACAATGGCC TCTACTAAAC CCTGTATATC AAGTCTGGGT TGTTTTGTAT TGAGTCTTAT
  TTATTTCCTG GCTCAGACTC CATCTCAGTA AGTATCCTTC CTTGAATCTG TCCTGCCTGG
  CTTTTCTGTA CTTGGCAGAA TCAGTGGGCT TCTCTCCCTG GTATTAAACC TGTGGGTTGG
  AAGCTGTTTG GCTCACCCCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60970723	NES16158013	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46573015					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60970723	NES16158013	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:13010829 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18339	CpG island 18339	1414 bp proximal
Lig1	ligase I, DNA, ATP-dependent	410 bp upstream
Rr400108	regulatory region 400108	1738 bp upstream
Rr642459	regulatory region 642459	796 bp proximal
Rr642460	regulatory region 642460	1231 bp proximal
Rr642461	regulatory region 642461	1523 bp proximal
Rr642462	regulatory region 642462	1770 bp proximal
Rr642463	regulatory region 642463	1924 bp proximal
Tssr64537	transcription start site region 64537	252 bp upstream
Tssr64538	transcription start site region 64538	351 bp upstream
Tssr64539	transcription start site region 64539	1641 bp upstream
Tssr64540	transcription start site region 64540	1875 bp upstream
Tssr64541	transcription start site region 64541	1973 bp upstream
Tssr70659	transcription start site region 70659	1758 bp downstream
Zswim9	zinc finger SWIM-type containing 9	Intron