rs46573229 SNP Detail

Summary

• ID
  rs46573229
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31897886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGAA CTGTTGGTAA TATGGACAGG
  Y
  GAGGTAGGCT CCTGGAGCTA TGGAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss145462653	ENSMUSSNP5224247	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss325359841	CHEV_17_31815857	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs46573229					SNP	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss159840698	UOL_MMUSEQ_9259	UOL_CGR	Mmu17_30637692_36837814	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31897886 () rs orientation: forward

Symbol	Name	Function Class
Cryaa	crystallin, alpha A	within coordinates
D17Rua3	DNA segment, Chr 17, Rutgers University 3	within coordinates
Gm50222	predicted gene, 50222	within coordinates
Tssr143680	transcription start site region 143680	973 bp downstream
Tssr143681	transcription start site region 143681	12 bp upstream
Tssr143682	transcription start site region 143682	657 bp upstream
Tssr143683	transcription start site region 143683	727 bp upstream
Tssr147305	transcription start site region 147305	788 bp upstream
Tssr147306	transcription start site region 147306	746 bp upstream
Tssr147307	transcription start site region 147307	718 bp upstream
Tssr147308	transcription start site region 147308	372 bp upstream