rs46573841 SNP Detail

Summary

• ID
  rs46573841
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:112263069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGATCCAGA TAGTGCCTCT
  GTGACTTCTC ATCTGGAGGG AGTATGTATA AATAAATGAG AGAGCTGTCT GTCAAGATTA
  CCTTGCTCTC ACTAAAAGAC ACCACCAAGA GGTGAGAGAT AGTCTACAAA GAGAAAGCTT
  TCCAAGTGTT CTACACATAG ATGCTTTTGA CAAAACGTTG TATCCAGAAT ATATAGATTT
  Y
  TTCCACAAAC TGATTCCTAG TGGCCAACTT TAAAAAAGAG TTTTACTTAA GCATGTTTAT
  GGGTAGCTGC GCATCAGTGT TGTGCCATAC ACATGCAGAT GCTTGCAAAG ACCAGAAGAG
  GGCATCATAG TTCCTGGTTC TGGGGTTCCA AATAGTTGGG GAGTTACCAT GTAGGTGCTG
  AGAACTGAGC CTGGGTCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60930435	NES16200120	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs46573841					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60930435	NES16200120	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:112263069 () rs orientation: forward

Symbol	Name	Function Class
5031434C07Rik	RIKEN cDNA 5031434C07 gene	within coordinates
Lmcd1	LIM and cysteine-rich domains 1	within coordinates
Rr636320	regulatory region 636320	1591 bp proximal