rs46574917 SNP Detail

Summary

• ID
  rs46574917
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126575409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCTGGTC TTGAACTCAC
  AATCCTATGA TCTCAGTGCA CCAAATACTG GCATTTTATA CATGTGTGCT ACCATCCTTA
  GCCTGATCTT TTCATTTCTT ATTGTTATGG AGTAATTTTC TTCTATGTCT TTTCCAAAGA
  GAAAGTCATG ACCTCTCCTG TTCTTGGCCA TCTATTATGA CTAGGTTACG TAAGGCAAAT
  Y
  GACGTTTTAG TACCTTTAAA TCATGAACTA CATGGATTGC ATATGAAAGA GTGAAACTGA
  GCGAGACAAA TATAGACATC TAATGAGAAT GATGATGGTA CCAACCAAGA CTCACAGATT
  AACATCATAA CAGTAACAAG AGGATCCCTT CCAAGAGATC TTAAAGGGGC TTGTTAAGTC
  TCAGAACAAA AGCACCTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135841097	ENSMUSSNP560454	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss320948065	CHEV_3_126484678	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46574917					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126575409 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Tssr31579	transcription start site region 31579			1370 bp downstream
Tssr31580	transcription start site region 31580			1353 bp downstream
Tssr31581	transcription start site region 31581			1344 bp downstream