rs46575082 SNP Detail

Summary

• ID
  rs46575082
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:84564990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGCCCAAG GCTACACTGC
  TTCCTCCTTT CTTTCTCCCT TTTATTTTGG TGTGGGGGTG GAGCCCAGGG ATGTGTCACT
  GAGTATTATC CTACAGCCCC CTGGTAGCCC TGCTTCACCT CGGTGACACT CAGCTGTTTG
  TCTGCTCTGC TCACTGTCTT CCATTCATAG CCAGCCACAG CTACTGCGTT CTTCTCATTT
  Y
  CAGAGTTTTG TGATGGTGGG CAGGCTCGAG AACCTGACTC CAGGTCAAGA TGGCTCGGCT
  TGCGAAGGTG CTTGCCGCAA AGCCTGGAGA CCTGAATTAG GTTCCTGGGA CTCATATGGT
  AGCACAGAAC TGACTCCAAG TTGTCCTCTG AACTCCCATG TGTGCTATGG TATGTGCTCC
  TACATACACA CACACACACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135427415	ENSMUSSNP5135599	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46575082					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:84564990 () rs orientation: forward

Symbol	Name	Function Class
Gm37240	predicted gene, 37240	within coordinates
Rr68541	regulatory region 68541	1590 bp distal
Rr68542	regulatory region 68542	411 bp proximal
Rr68543	regulatory region 68543	1211 bp proximal
Rr76452	regulatory region 76452	1302 bp proximal