rs46575347 SNP Detail

Summary

• ID
  rs46575347
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:125925049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAGAAACC AGGCAAAATA
  CAATCCACCA AGTTACAGTG ACCCAATACA TAAGGAATGT ATACATCAAA AGAAGGCGGG
  GACCAGGCTG CTGCCGAAAA GAAGGGAGCC AGGTGTAAAC TGGTCTATTG TTAAACCCAC
  CACCAGGGGT TCTGCACTAG CAGACCTTTT CAAGAATACT GCAATACCCC AACACCCTAT
  K
  TCCTGGGTCT ACAGAAGAAT TTACCAACTT GCTTCTAATA TGAAGCTTGC AATACCTAGC
  TGTAGAGAAG ATCCCTGTCT CAGTGGGATT CCCTAGCTCT AATATGGTAT TCCCTTTTCT
  ACTGTCCTTA GTAAATATTT TTGCAGACCA GCTCTGAGCT ACTGGCTCCG TCTTTTGTAA
  TGCTTAATTA GTTACTGAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145872496	ENSMUSSNP7207068	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46575347					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:125925049 () rs orientation: forward

Symbol	Name	Function Class
D7Csu3	DNA segment, Chr 7, Central Connecticut State University 3	85 bp distal
D7Csu4	DNA segment, Chr 7, Central Connecticut State University 4	468 bp distal
Rr153599	regulatory region 153599	1649 bp distal
Rr153600	regulatory region 153600	within coordinates
Rr381445	regulatory region 381445	within coordinates
Tssr69016	transcription start site region 69016	1885 bp downstream
Tssr74630	transcription start site region 74630	945 bp upstream
Tssr74631	transcription start site region 74631	1330 bp downstream