rs46576259 SNP Detail

Summary

• ID
  rs46576259
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:150842461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCCAATT CGTTCTGAGA
  TTTCACATTG GATCCATCCT CATTAGCACG CGGTGGAGCG CTGTCTGCCT GCCTGCGAGG
  TTTCTTATAG CCTCAGAGAA GCAGAAGAAA GCTGTCAGGG CCCCAGGGGA GCTTGTGGGC
  TGGTGCCCGC TGTATGTGTG AGCTTTCCAG AGAACCCACA ACTGCTCCTT CTGCCATTAA
  M
  ATCTAGCTAA GGGAGCGCAG ACTCAGGTAA GAGGTGCGAT TTAGGGTTGG AGAGATGGCT
  CAGTGGTTAA GAGCACTGAC TGCTCTTTCA AAGGTCCTGA GTTCAAATCC CAGCAACCAC
  ATGGTGGCTC ACAACCATCC GTAATGAGAT CTGACGCCTT CCACTGGTGT GTCTAAAAAA
  ACAGCTATAG AGTAACTACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60858699	NES15999390	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46576259					SNP	A	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60858699	NES15999390	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:150842461 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17112	CpG island 17112	117 bp distal
Rr625814	regulatory region 625814	1694 bp distal
Rr625815	regulatory region 625815	95 bp distal