rs46576427 SNP Detail

Summary

• ID
  rs46576427
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99941281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCTCACC TTCTCCATAT
  AGGAGGCCAG GCGGTCATTC AGGAACTGCA TGGTCTCCTT CTCATTGCCA TTGAAGGAGC
  CCTCACAGAA CCAATTGCAG TTGCCCACAT TGGCGGGGAT GTTGCAGGCC CCAGGCAGGG
  TGCAGCCATG GCAGCTGGGG GGCACACAGG GCCGGGAGGA GCAGCTGGTG CGGCAGCTCA
  K
  GGCCGGCAGG CAGCAATTGT ATGGCATGGT GCTGGAGGGA GGGAGAGAGG TACCTGGCTG
  AAGACTCGGT GTGAATTCTC CAAGCCTCAG AGCTCTGAGT CTCCTTCCCT TGGTGAGACT
  TTATAAGCCT TCTACAGAGG GTGTGGACAC AGTATGTAAC ATCTTTTTTT CTTTGTACTT
  CTTCACTGGT TTTCAGACGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss132717790	ENSMUSSNP705998	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs46576427					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99941281 () rs orientation: forward

Symbol	Name	Function Class
D11Dcr21	DNA Segment, Chr 11, Derry C. Roopenian 21	422 bp proximal
D11Mit123	DNA segment, Chr 11, Massachusetts Institute of Technology 123	268 bp proximal
D11Mit123.3	DNA segment, Chr 11, Massachusetts Institute of Technology 123.3	204 bp proximal
Gm11571	predicted gene 11571	1831 bp upstream
Krt31	keratin 31	within coordinates
Tssr104894	transcription start site region 104894	1649 bp upstream
Tssr104895	transcription start site region 104895	1805 bp upstream
Tssr104896	transcription start site region 104896	1826 bp upstream
Tssr110726	transcription start site region 110726	87 bp downstream