rs46577016 SNP Detail

Summary

• ID
  rs46577016
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:73605791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTGGCTA GGGCAGGGAC
  ACCTTAGCTG TGATGCTTTC CTAGGCCCAG TACACCCCGC TGATACCAGG GGATCTTCCC
  TCTGCTCTTC CCTTGGCCTG CCAAGACGAG GGCATTTGGA TGGACAGAGT CAGGCTAATT
  TGGGATCCTA GGCCTGTGTT CACAGCTGGG AGGCAACACC CAGAGAATCC ACAGGATACG
  R
  CACATAAGCC CGCTGAGCAC GGGAGCAGAA GGATGGGTCC TGGTCCTCAA AGATTCCAGA
  GATGATATAG AGACCATCAG GCCATGCAGG CTAGGGTGAT CTGGAGAGTG TGTGCGTGGT
  TTCTGGCCAA CAGCTCAGCA GGTCTGTGAC CAGAGAGTCC CCTAGAGAGT CCAGAGACAT
  CATTCAGGAA GTCTTTGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52569509	NES15628732	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46577016					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52569509	NES15628732	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:73605791 () rs orientation: forward

Symbol	Name	Function Class
Ptp4a3	protein tyrosine phosphatase 4a3	within coordinates
Rr311850	regulatory region 311850	990 bp distal
Rr369950	regulatory region 369950	1220 bp downstream
Rr369951	regulatory region 369951	1040 bp upstream
Tssr134712	transcription start site region 134712	1129 bp downstream