rs46579414 SNP Detail

Summary

• ID
  rs46579414
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:84565334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCTGAAC TCCCATGTGT
  GCTATGGTAT GTGCTCCTAC ATACACACAC ACACACGGAC ACACACACCC CACATAATGT
  TAGGAAACTG ATGAAGAGGA GGAGGAGGTG GAGGAAGAAG AATCCAGTTC ACAGGTGTTT
  GCAGCAAGCC TGGCTAAGCT GAGGCCTTGT CCTCTGAAGA CCTGTATCTG GTGGCCGTGC
  W
  GAATCAATGT TGAGGATACA GTATCTTAGT CAGCCCTGCT ATTTTCTTTC TTCAGGGTTT
  ATATTTATTT ATGTGTATGT GTGTATCTTT ATGAGACTCT ATCACATATG CATGCAGGTA
  CGTGTGAAGG CCAGAAGAGG GCGTTGGATC CCTTGGATCT GGAGTTCCAG GCAGATGTAA
  GGCATCTAGC ATAGGTGCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss135427424	ENSMUSSNP6988492	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs46579414					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:84565334 () rs orientation: forward

Symbol	Name	Function Class
Gm37240	predicted gene, 37240	within coordinates
Rr68541	regulatory region 68541	1934 bp distal
Rr68542	regulatory region 68542	67 bp proximal
Rr68543	regulatory region 68543	867 bp proximal
Rr76452	regulatory region 76452	958 bp proximal
Rr83250	regulatory region 83250	1937 bp proximal