rs46580847 SNP Detail

Summary

• ID
  rs46580847
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:70118933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCTAGTT CAGGATACTA
  CTACCTTGGG GTGCGGTGCG GTGGGCCAGC CCAGGGCATC CTCTCTTGGA AGAGAAGCCC
  ATCAGGCACT GGATAGACAG AGAGGAGGCA ATGGGAAGGT GAAAGTCGTC CCACCCCCAT
  CTCTGCTGAG GACTCCGCAG GTGGAAACTT CAGTGGAGAG TAAACAAGAA ATACACGTCC
  S
  GTCCAAAGAG GAACGGCCAT GGTTATTACA CTGACCATAT TACCAGGTTC TCTTGTAGAC
  GCGCATGCAG TCTAGAGCCT GTGCTGGACT GCTCATTTTT ATGTATCCTG ATGTCTCTGA
  CAGGCCAAGC ACGCTCATCT GTGGCTCATC TGCCCGGAGC CACTATGAGC TCAGTATGTG
  TCCGTGAACC ACAATACTTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136604732	ENSMUSSNP5607629	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46580847					SNP	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:70118933 () rs orientation: forward

Symbol	Name	Function Class
Gm26849	predicted gene, 26849	within coordinates
Gm68934	predicted gene, 68934	within coordinates
Myo1e	myosin IE	within coordinates
Rr206678	regulatory region 206678	1732 bp distal
Tssr85881	transcription start site region 85881	1560 bp upstream
Tssr90403	transcription start site region 90403	70 bp downstream