rs46581544 SNP Detail

Summary

• ID
  rs46581544
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148371939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTCC CGCAGACCGA AGCTGCAGCC
  M
  GTCCCCAGCG TGTTGGTGCA AGCTT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss148000213	ENSMUSSNP831043	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss321418875	CHEV_4_147661591	CHEVERUD	SCREENING_POP	f	SNP		C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs46581544					SNP	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148371939 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15301	CpG island 15301			within coordinates
Disp3	dispatched RND transporter family member 3			Intron
				Noncoding-Transcript-Variant
Gm68159	predicted gene, 68159			785 bp upstream
Rr604639	regulatory region 604639			within coordinates
Rr604640	regulatory region 604640			473 bp proximal
Rr604641	regulatory region 604641			672 bp proximal
Rr604642	regulatory region 604642			796 bp proximal
Rr604643	regulatory region 604643			815 bp proximal
Rr604644	regulatory region 604644			929 bp proximal
Rr604645	regulatory region 604645			1095 bp proximal
Tssr44603	transcription start site region 44603			445 bp downstream