rs46581687 SNP Detail

Summary

• ID
  rs46581687
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:10981868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGATGAAAGT GTCCGAAGAG
  GACTCGCACA ACATGGGGTC AAGGACACAA CTCATGACCT AAACCAAAGT TGAGCAGCTA
  AACCAACTGA TCCAATGCTA GGGTGGGCAG GAAGTGCGCA AGCGCGCAGC CTTCCCGGAC
  GGGGCGGGGC GAGGCGGGGT GCAGGGGGCG GGGCAGATAA ACTGTGGCTC GGGCGCCGAG
  T
  CGCTCCGCTC TCACCCTAAG GCTGGCCATG GTGCTGCGTG GCGTCAGGGT TGTGGAGCTG
  GCAGGCCTGG CCCCGGGGCC GTTCTGCGGA ATGGTCCTGG CGGACTTCGG CGCCGAGGTG
  GTGCGCGTGA ACCGGCTGGG CTCCACGGGC GAGAATTTTC TGGCCCGAGG CAAGCGCTCG
  CTAGCGCTGG ACCTGAAGCG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss147066963	ENSMUSSNP2512131	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs46581687					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:10981868 () rs orientation: forward

Symbol	Name	Function Class
Amacr	alpha-methylacyl-CoA racemase	7 bp upstream
C1qtnf3	C1q and tumor necrosis factor related protein 3	1632 bp downstream
Cpgi6946	CpG island 6946	within coordinates
Gm34315	predicted gene, 34315	149 bp upstream
Rr301970	regulatory region 301970	1668 bp distal
Rr311562	regulatory region 311562	within coordinates
Tssr130700	transcription start site region 130700	17 bp downstream
Tssr130701	transcription start site region 130701	within coordinates