rs46582066 SNP Detail

Summary

• ID
  rs46582066
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70414921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACTCACGTC CACATGCACT AGAATGGCAC GATTTTTTTT
  TATTCTACAA ACCATATTTA ATTATAAAAT CAAGAATTTT AGTATACAAG AATTGAGTTG
  R
  CCCAAGTATT TATATAAAGA ACCAACCTAC ATAATTCATT AGACAAGAAA TGATTTCTTC
  ATTGTAATGA CTCTTTTTTT TTCCATATTT TTTTATTGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132372248	ENSMUSSNP2367693	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss323735949	CHEV_11_70337597	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46582066					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70414921 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3188	CpG island 3188	1158 bp proximal
Psmb6	proteasome (prosome, macropain) subunit, beta type 6	1272 bp upstream
Rr369269	regulatory region 369269	969 bp upstream
Rr450320	regulatory region 450320	544 bp distal
Rr450321	regulatory region 450321	505 bp distal
Rr450322	regulatory region 450322	801 bp proximal
Tssr102728	transcription start site region 102728	1266 bp upstream
Tssr102729	transcription start site region 102729	1814 bp upstream
Tssr102730	transcription start site region 102730	1859 bp upstream
Tssr102731	transcription start site region 102731	1886 bp upstream