rs46584272 SNP Detail

Summary

• ID
  rs46584272
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121267471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCC ATCCTGAAAT TCACTCTGTA
  R
  ACCAACCAGG CTGGCCTGGA ACTCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147386079	ENSMUSSNP1978802	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320483156	CHEV_2_121262726	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs46584272					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121267471 () rs orientation: forward

Symbol	Name	Function Class
Pdia3	protein disulfide isomerase associated 3	within coordinates
Rr563821	regulatory region 563821	1849 bp distal
Rr563822	regulatory region 563822	1928 bp distal
Tssr19767	transcription start site region 19767	1068 bp downstream
Tssr19768	transcription start site region 19768	626 bp downstream
Tssr19769	transcription start site region 19769	617 bp upstream
Tssr19770	transcription start site region 19770	915 bp upstream