rs46584394 SNP Detail

Summary

• ID
  rs46584394
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30121077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAAGCACCT ACTTCCAGGA AGACCAAGTA ATGACACTCT
  TCAAGGTCAG CCCCTCCCAT TCAGAGTCTA AGTTAGCTCT GCGGCTTCAC CCGGGACTCC
  S
  GGGACTGTGG GCGGGGCTCC GCCTTGAACC GGGCGTGGCC AAAAGACGAA TTTAAAAACT
  CGCGGGGGAC CTGGCTTTAG ATCGGGGACC CGGCGGCGG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148677493	ENSMUSSNP5695607	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	C
ss322134113	CHEV_7_31206671	CHEVERUD	SCREENING_POP	f	SNP				G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46584394					SNP	G	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30121077 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18799	CpG island 18799	within coordinates
Cpgi18800	CpG island 18800	1442 bp proximal
Hcst	hematopoietic cell signal transducer	1798 bp upstream
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	80 bp upstream
Rr368301	regulatory region 368301	1710 bp downstream
Rr400239	regulatory region 400239	within coordinates
Rr400240	regulatory region 400240	480 bp upstream
Rr644812	regulatory region 644812	1980 bp distal
Rr644813	regulatory region 644813	1308 bp distal
Rr644814	regulatory region 644814	within coordinates
Rr644815	regulatory region 644815	264 bp proximal
Rr644816	regulatory region 644816	1133 bp proximal
Tssr2184	transcription start site region 2184	1692 bp upstream
Tssr65711	transcription start site region 65711	1987 bp downstream
Tssr65712	transcription start site region 65712	1960 bp downstream
Tssr65713	transcription start site region 65713	1703 bp downstream
Tssr65714	transcription start site region 65714	72 bp upstream
Tssr65715	transcription start site region 65715	620 bp upstream
Tssr65716	transcription start site region 65716	737 bp upstream
Tssr65717	transcription start site region 65717	781 bp upstream
Tssr65718	transcription start site region 65718	809 bp upstream
Tssr65719	transcription start site region 65719	1614 bp upstream
Tssr65720	transcription start site region 65720	1653 bp upstream
Tssr65721	transcription start site region 65721	1710 bp upstream
Tssr65722	transcription start site region 65722	1729 bp upstream
Tssr65723	transcription start site region 65723	1760 bp upstream
Tssr65724	transcription start site region 65724	1776 bp upstream
Tssr65725	transcription start site region 65725	1948 bp upstream
Tssr65726	transcription start site region 65726	1955 bp upstream
Tssr65727	transcription start site region 65727	1973 bp upstream
Tssr71741	transcription start site region 71741	1876 bp upstream
Tssr71742	transcription start site region 71742	1780 bp upstream
Tssr71743	transcription start site region 71743	1290 bp upstream
Tssr71744	transcription start site region 71744	1279 bp upstream
Tssr71745	transcription start site region 71745	16 bp upstream