rs46584542 SNP Detail

Summary

• ID
  rs46584542
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58409360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAATCTTTGT TTCCCTTAAT TAATAAATCT CAAGCAACAA
  CTAAACTCTG CCTTCATGAA ATGTACAACT TAAAACAAAG AGCAGAACAG CAGAGCCCTG
  A
  AAAAGAGCTG ACTGGATGTT ACCCTTCAGA ACGATCTTCA TTGGGAGGGT CTCCAGGCCT
  CAGTGGGGGA GAGCATTAGA GAGATGAGAG AAATAGAAG                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320783037	CHEV_3_58305861	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs46584542					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58409360 () rs orientation: forward

Symbol	Name	Function Class
Gm66340	predicted gene, 66340	1036 bp downstream
Rr577237	regulatory region 577237	78 bp proximal
Rr577238	regulatory region 577238	1980 bp proximal
Tssr29204	transcription start site region 29204	241 bp upstream