rs46586620 SNP Detail

Summary

• ID
  rs46586620
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:20772891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTATAAGCT ATCCAGTTTT
  ACTTGAAGGC TGAATAACCA AGGGATCGAA TTTCTTCCTA ATCATTCAAA CCGCAGGAAA
  GAACACAAAG CCTTGCTGCT GTGTATGTTC TGTACAAAAA CTGTTTTTAG AGATATGTTA
  AGAACCCATT GTCAAAAGCC AAAGAACTTG AAATTAGCCT AGGATGTGGA GGCAGGACTA
  M
  AATTTTGAGG TTAGCTTGAA CTACACAGAA ACATCTGGAC AGTGGTGGGG GGAGGGGGAA
  GGAGAAGGTA GGGAGATGAA CTGCATCCTA AAGGAGAGTG GATAAAATAT GCCACTGTAT
  AATATATATA TATATACCCT TACAGTGGAA CACTGCTCAT CAATGTAAGG GGAAACAGTT
  GAAGCAGTAC GAATGTAGCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss131781656	ENSMUSSNP5744923	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs46586620					SNP	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:20772891 () rs orientation: forward

Symbol	Name	Function Class
Gm32213	predicted gene, 32213	1729 bp downstream
Lgalsl	galectin like	685 bp downstream
Rr443482	regulatory region 443482	478 bp proximal