GAGACAGGGT CTCATATAGC CTAGGCTGGC CTTGATGGAT GTCTGCCTCC TAAGAACTGG AATTTTAGAC ATGCTCCCCC ATGTCTGGCT TATTTAAAAA W TTTTAGAAGC CTTACAAGGT AAGTACTGTT ATTTCCATTT CATGCATGAG AAAAATGAGT CTCTGAGAAG TTAGGTTACC TGCATGATAT TAATACAGC W = A/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129X1/SvJ |
A/J |
DBA/2J |
LG/J |
SM/J |
---|---|---|---|---|---|---|---|---|---|---|
ss146833673 | ENSMUSSNP1042970 | ENSEMBL | ENSEMBL_Sanger | f | SNP | T | A | A | ||
ss320371855 | CHEV_2_84501298 | CHEVERUD | SCREENING_POP | f | SNP | T | A | |||
SNP Consensus Information | ||||||||||
SNP | Consensus Type | 129X1/SvJ |
A/J |
DBA/2J |
LG/J |
SM/J |
||||
rs46586785 | SNP | T | A | A | T | A |
Location: Chr2:84491485 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Btbd18 | BTB domain containing 18 | Intron | ||||||
mRNA-UTR | ||||||||
Noncoding-Transcript-Variant | ||||||||
Cpgi11859 | CpG island 11859 | 1722 bp distal | ||||||
Gm28635 | predicted gene 28635 | Intron | ||||||
Rr560294 | regulatory region 560294 | 1640 bp distal | ||||||
Rr560295 | regulatory region 560295 | 530 bp distal | ||||||
Rr560296 | regulatory region 560296 | 655 bp distal | ||||||
Rr560297 | regulatory region 560297 | 520 bp distal | ||||||
Rr560298 | regulatory region 560298 | 1827 bp proximal | ||||||
Rr560299 | regulatory region 560299 | 1928 bp proximal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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