rs46586790 SNP Detail

Summary

• ID
  rs46586790
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:164036329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCAACATA ACTGAGAAAA
  CACAAACATG ACCTATGTGC TAGAAAGGGT GGATGATGGC TTACAACTGA CTAAACATGG
  CCTGAAGCCA AGGTTTCATC ACTGAGGACT AGCTTGGCAG CCAAAGTTCA TGTCACCTGC
  CTGGTCTCAT AACTATAGCA TATAGGTCTG GTTCTCTGCT GTACTAAACT TATTTGAGAA
  R
  TTGGTAGTTT TCTATTGAGG GTGGGGAGAA TTCTTCAAGC CAGACATGGT AGTATATGGT
  TGAGGCAGAA AAACAGTGAA CTTTAGTCCT GCCTGGTCTA TATATACAAC AAGACTTTTT
  TTTTTTTCAA AAATAAATTA ATTCACAAAT TCCTTTTTTT CTTCTTTTGA ATTTAGCTTA
  TTGGGAGCCC AGATTAGCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145974640	ENSMUSSNP2131686	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs46586790					SNP	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164036329 () rs orientation: forward

Symbol	Name	Function Class
F5	coagulation factor V	Intron
Rr422161	regulatory region 422161	within coordinates