rs46588399 SNP Detail

Summary

• ID
  rs46588399
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:56916591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGCTTCCC CGCAAGTTAC
  TCAAGTCAGC TACGGAGGGA GATGGGCAGG ATTGCCTACG CATCTGAATT GCACCTAAGA
  GTAAATTGAA GCAGTAGGGT GATAAGGGCT GGCTGAAGCC AGTTTCCCTA CACAGACCGT
  GAGAAAGGTC CGTAACAACC GGAAGTGAGC CGTCGCAGGA CCCTAAGCCA CGAGGCAGAG
  R
  TGCCTACAGC CCCGAACTTT CTCAGGGCCT CCACGATTGT CCACGCACCT CATTAGCGAC
  CACACTCGAG CCACCATGGT TAGTCTCTCG CTTCACTCGC CGCGCAAGGA CAAGTAATTC
  GCCCGCCGCT TCCGGTTGGT GTCGCTGCTG AGACTCCTGG GAAATGTAGT GGTCGCTGTC
  AGCCGCAATG GAGTTAGACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62806718	NES17364205	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46588399					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62806718	NES17364205	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:56916591 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9367	CpG island 9367	within coordinates
Gm56912	predicted gene, 56912	161 bp upstream
Micos13	mitochondrial contact site and cristae organizing system subunit 13	within coordinates
Rr340044	regulatory region 340044	within coordinates
Rr370299	regulatory region 370299	51 bp upstream
Tssr145313	transcription start site region 145313	294 bp upstream
Tssr148822	transcription start site region 148822	84 bp downstream
Tssr148823	transcription start site region 148823	98 bp downstream
Tssr148824	transcription start site region 148824	213 bp downstream
Tssr148825	transcription start site region 148825	232 bp downstream
Tssr148826	transcription start site region 148826	337 bp downstream
Tssr148827	transcription start site region 148827	367 bp downstream
Tssr148828	transcription start site region 148828	397 bp downstream